NGS Data and Analysis

Analysis of NGS data https://www.illumina.com/systems/sequencing-platforms.html

RNA sequencing

https://www.illumina.com/techniques/sequencing/rna-sequencing.html RNA with 3' poly(A) tails are mature, processed, coding sequences Ribosomal RNA Depletion

Method

  • mRNA-Seq
  • Total RNA-Seq
  • Targeted RNA-Seq
  • Small RNA-Seq
  • Single-Cell RNA-Seq
  • Ribosome Profiling
  • RNA Exome Capture Sequencing

Studies

  • Gene expression profiling/Gene signatures
  • Differentially Expressed Genes
  • Iisoform analysis
  • Splice Expression Variation Analysis
  • Long non-coding RNAs analysis
  • Fusion gene detection
  • Pervasive transcription

DNA sequencing

https://www.illumina.com/techniques/sequencing/dna-sequencing.html

Method

  • Whole-Genome Sequencing
  • Targeted Resequencing
  • ChIP Sequencing
  • Exome Sequencing
  • Amplicon Sequencing
  • Targeted Gene Sequencing
  • Panels Genotyping by Sequencing
  • Mitochondrial Sequencing
  • De Novo Sequencing (mate pair sequencing and long-read technology)
  • Phased Sequencing

Studies

  • Genetic Linkage Analysis
  • Genome-wide association study
  • Genotypes and haplotypes
  • Single Nucleotide Polymorphisms and Copy Number Variation

Microbiome

https://www.illumina.com/areas-of-interest/microbiology/human-microbiome-analysis.html

Method

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