NGS Data and Analysis
Analysis of NGS data https://www.illumina.com/systems/sequencing-platforms.html
RNA sequencing
https://www.illumina.com/techniques/sequencing/rna-sequencing.html RNA with 3' poly(A) tails are mature, processed, coding sequences Ribosomal RNA Depletion
Method
- mRNA-Seq
- Total RNA-Seq
- Targeted RNA-Seq
- Small RNA-Seq
- Single-Cell RNA-Seq
- Ribosome Profiling
- RNA Exome Capture Sequencing
Studies
- Gene expression profiling/Gene signatures
- Differentially Expressed Genes
- Iisoform analysis
- Splice Expression Variation Analysis
- Long non-coding RNAs analysis
- Fusion gene detection
- Pervasive transcription
DNA sequencing
https://www.illumina.com/techniques/sequencing/dna-sequencing.html
Method
- Whole-Genome Sequencing
- Targeted Resequencing
- ChIP Sequencing
- Exome Sequencing
- Amplicon Sequencing
- Targeted Gene Sequencing
- Panels Genotyping by Sequencing
- Mitochondrial Sequencing
- De Novo Sequencing (mate pair sequencing and long-read technology)
- Phased Sequencing
Studies
- Genetic Linkage Analysis
- Genome-wide association study
- Genotypes and haplotypes
- Single Nucleotide Polymorphisms and Copy Number Variation
Microbiome
https://www.illumina.com/areas-of-interest/microbiology/human-microbiome-analysis.html
Method
- Shotgun metagenomic sequencing
- 16S rRNA sequencing
- Microbial metatranscriptomics
Studies
Inflammatory and infectious diseases https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5292562/ Liver Disease https://www.sciencedirect.com/science/article/pii/S2352345X15000648 Parkinson's Disease. https://www.ncbi.nlm.nih.gov/pubmed/28429209